"From Microscopy Data to in Silico Environments for in Vivo-Oriented Simulations", Noriko Hiroi, Michael Klann, Keisuke Iba, Pablo de Heras Ciechomski et al., EURASIP Journal on Bioinformatics and Systems Biology, 2012. This paper depicts how to reconstruct and simulate a yeast cell in 3D from 3D microscopy.

"BioInspire - Generative Animation and Surface Representations for Life Science Visualizations", Pablo de Heras Ciechomski et al., Eurographics and ACM SIGGRAPH Symposium on Computer Animation SCA, EPFL, Lausanne, Switzerland, 2012. This poster summarizes the BioInspire animation, simulation and rendering system as it pertains to automated creation of massive scenes of Life Science processes.

"Spatial Simulations in Systems Biology: From Molecules to Cells", Klann M, Koeppl H, 2012.

"Hybrid spatial Gillespie and particle tracking simulation", Klann M, Ganguly A and Koeppl H, 2012, Bioinformatics.

"ZigCell3D An Interactive Simulation and Visualization Tool for Intracellular Signaling Dynamics", Heinz Koeppl, Pablo de Heras Ciechomski, CTI MedTech Event 2012. A poster presented for the Commision for Technologx and Innovation (CTI) about the ongoing project ZigCell3D and its application to simulate chemical signalling cascades to better understand and optimize chemical reactions in single cell processes.